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General Chemistry Review
Valence Electrons of the First Row Elements
Last updated: December 13th, 2022 |
General Chemistry Review: Valence Electrons of The First Row Elements
[Note: the following article is intended as a quick review on atomic orbitals for students enrolled in an introductory organic chemistry class who are assumed to have taken general chemistry. It is by no means a complete introduction to atomic orbitals. Also: this post was co-authored with Matt Pierce of Organic Chemistry Solutions. Ask Matt about scheduling an online tutoring session here. ]
Table Of Contents
- The Most Important Graph Ever Made?
- The Graph Is Explained By The Periodic Filling of Electronic Energy Levels (aka “Orbitals”)
- Orbitals Are Defined By The Three Quantum Numbers n, l, and m
- A Tour Of The Electronic Configurations of The First 11 Elements
- The 1s shell: Electronic Configuration Of Hydrogen and Helium
- The 2s Shell: Electronic Configuration Of Lithium and Beryllium
- The 2p Shell: Boron, Carbon, and Nitrogen
- A Sudden Dip At Oxygen
- The Electronic Configuration Of Fluorine
- A Maximum At Neon
- The 3s orbital: Sodium
- Endnote: A Puzzle. What About A Simple Molecule Like CH4?
- Notes
1. The Most Important Graph Ever Made?
Quote:
“If, in some cataclysm, all of scientific knowledge were to be destroyed, and only one sentence passed on to the next generation of creatures, what statement would contain the most information in the fewest words? I believe it is the atomic hypothesis that all things are made of atoms — little particles that move around in perpetual motion, attracting each other when they are a little distance apart, but repelling upon being squeezed into one another. In that one sentence, you will see, there is an enormous amount of information about the world, if just a little imagination and thinking are applied.”
–Richard P. Feynman
Well of course a chemist like myself is going to love a quote that extolls the central importance of chemistry to scientific knowledge. You can always trust a barber to find an uplifting quote about the importance of haircuts.
That caveat aside, if one had to name a single graph which could be saved from a cataclysm for the next generation of creatures, my vote would be for this one:
What’s going on here?
- The x-axis shows every element of the periodic table, in increasing order of atomic number.
- The y-axis shows the amount of energy required to ionize each neutral element to a charge of +1 (the “first ionization energy”). In other words: “how easy is it to pull off an electron off each element?”.
There is a tremendous amount of information about atomic structure embedded in this extremely simple plot, but the concept itself isn’t so hard to understand: “how much energy does it take to rip an electron off a neutral element?”
Two important things to note:
- First, note the broad trend: generally, as elements increase in size, the amount of energy required to pull an electron away from the atom decreases. We can draw an analogy here to planets orbiting the sun: all else being equal, the further away a planet (electron) is from the sun (nucleus), the less attractive force there will be between the two (as measured by Newton’s law of gravitation in one case, and Coulomb’s law in the other). Indeed that “planetary” analogy was the basis for the Bohr model of the atom.
- Second, note the periodic trend: there are certain elements (He, Ne, Ar, Kr, Xe) which have unusually high ionization energies, followed by elements (Li, Na, K, Rb, and Cs) with unusually low ionization energies.
2. The Graph Is Explained By The Periodic Filling of Electronic Energy Levels (aka “Orbitals”)
Note how interpreting the diagram above flows naturally into a discussion about orbitals.
It was Bohr who first made the connection (1923) that the periodicity of atomic properties could be explained by the periodic filling of electronic energy levels.
In an early model of the atom (1913), it was imagined that electrons occupied progressively farther orbits around the nucleus, much like the planets in their ever-larger celestial spheres around the sun. While the “electronic energy levels” that Bohr described are indeed now called “orbitals”, the analogy ends there. Bohr didn’t anticipate just how weirdly-behaved electrons can be, relative to planets. Nor did anyone else in 1913. [Note 1]
What do I mean by “weirdly-behaved”? Well, if one knows the position and momentum of Venus, for example, then one can then calculate its positions at distant future times (such as the transit of Venus predicted for 3:48 AM UTC on June 10, 2498).
Heisenberg showed that at the subatomic scale, there are limits to the precision with which one can know both the position and momentum of a particle like an electron. The result is that our knowledge of the exact positions of electrons are fuzzy; they have to be described as probability functions. What we call “orbitals” are in fact 3-dimensional shapes where an electron with a given set of quantum numbers has a 95% chance of being found. [Note 2]
3. Orbitals Are Defined By The Three Quantum Numbers n, l, and m
These orbitals have properties which are defined by the three essential terms in a particular form of the Schroedinger wave equation:
- the principal quantum number n (1, 2, 3…), which is sometimes referred to as the “electron shell“, as it broadly relates to distance from the nucleus.
- ℓ (called the azimuthal quantum number, but knowing that name is not essential). For a given value of n, the possible values of ℓ can range from 0 up to (n–1). So when n = 1, ℓ = 0. When n = 2, ℓ can have values of 1 or 0.
The value of ℓ determines the shape of the orbital. For ℓ = 0, the shape of the orbital is spherical – an orbital we refer to as an s orbital.
For ℓ = 1 (which is only possible when n = 2 or above) the orbital has a dumbbell-like shape, which we refer to as a p-orbital. The higher observed values are ℓ = 2 (d orbitals) and ℓ = 3 (f orbitals) which are themselves fascinating, but in true organic chemistry fashion, we will skip. - m, which is the magnetic quantum number. The value of m depends on the value of ℓ, and can take the values –ℓ to +ℓ, inclusive of zero. So for ℓ = 1 (the p-orbital), m can have a value of –1, 0, or +1. The physical interpretation of this is the three orientations possible for the p-orbital, along the x, y, and z axes. m can take on five values for the d-orbitals (ℓ = 2) and seven values for the f orbitals (ℓ =3).
In addition to n, ℓ, and m, there is also fourth quantum number known as electronic spin, which can take on the value +½ or –½ for electrons.
Finally, the last bullet point:
- No two electrons can have the same set of quantum numbers (which is to say, they cannot have the same quantum state) as elucidated in Wolfgang Pauli’s exclusion principle. (Electrons belong to a family of particles called fermions which share a property analogous to “one seatbelt per occupant”). It’s an atom, not a clown car!
What this means is that electrons in atoms “build up” in energy level in a well-defined pattern, starting with 1s (which can hold two electrons, with opposite spins), followed by 2s (which also holds two electrons) and then 2p (which due to the three possible values of m, can hold 3 × 2 = 6 electrons, and then 3s (2 electrons) and so on.
4. A Tour Of The Electronic Configurations of The First 11 Elements
We could go on filling up electrons, but that’s not the intended point of todays post, which is merely to review the atomic configurations of each of the first 11 elements while referring back to their first ionization energies as a guide.
So let’s tour the electronic configurations of the first 11 elements, shall we?
5. The 1s shell: Hydrogen and Helium
Let’s look at the (first) ionization energies for hydrogen and helium:
Hydrogen: 1312 kJ/mol
Helium: 2372 kJ/mol
Hydrogen has a single electron in the 1s orbital with spin of either +1/2 or – 1/2 (they are of the exact same energy, except in a strong magnetic field).
We can represent the electronic configuration in two ways:
- the notation 1s1 , where 1 refers to the shell number (principal quantum number n), s is the shape of the orbital (other values are p, d, and f) and the superscript refers to the number of electrons in that orbital
- alternatively, with a box showing the orientation of electrons in each orbital (the direction of the arrow noting the spin). For a half-filled orbital, the direction of the spin is arbitrary; I’m going to draw it as “up” here and in all future examples, but it’s not incorrect to draw it as pointing down instead.
Helium has two electrons in the 1s orbital, each with opposing spins (+1/2 and –1/2), which we represent below.
It’s almost twice as difficult to remove an electron from helium than from hydrogen (compare: 2372 kJ/mol versus 1312 kJ/mol).
Why the higher ionization energy? Because each electron in the 1s orbital of helium now has two protons from the nucleus pulling on it instead of just one, which results in a stronger attractive force according to the Coulomb equation.
Note that it’s not exactly twice as much; we can rationalize the lower value as being due to repulsion between the two electrons in the 1s orbital.
6. The 2s Shell: Valence Electrons of Lithium and Beryllium
With the 1s orbital full, the third element (lithium) must therefore have its electron placed in the 2s orbital, which is not only farther away from the nucleus, but also has the attractive force of the nucleus partially shielded by the intervening pair of electrons in the 1s orbital. This shielding leads the electron in the 2s orbital of lithium to only “feel” an effective nuclear charge of (3 – 2) = +1 from the nucleus.
Hence, this electron is particularly easy to rip off, requiring a mere 520 kJ/mol (compare to 2372 kJ/mol for helium!). Lithium metal will readily participate in chemical reactions; it will react slowly with water, for example. Helium, on the other hand, has never been observed to combine with another element.
In contrast, the two electrons in the 1s shell of lithium never participate in reactions. We can call these chemically inert electrons the “inner shell” electrons, as opposed to the “outer shell” , or “valence” electron in the 2s orbital.
Since all the interesting chemistry happens with the electrons in the 2s orbital (and not the electrons in the “inert”, closed, 1s shell) a useful shorthand is to draw the electronic configuration of lithium as [He] 2s1 , meaning that lithium has the electronic configuration of helium, plus a single valence electron in the 2s orbital.
In the fourth element, beryllium, the 2s orbital becomes fully occupied with a pair of electrons of opposite spin. Note the increased ionization energy (+379 kJ/mol from lithium) as the electrons feel a greater attraction from the extra proton in the nucleus.
Also note that although beryllium has a filled 2s orbital, in no way does it behave like a noble gas. Beryllium metal reacts readily with oxygen to form an oxide layer, for example. Unlike the gap in energy between 1s and 2s, the gap in energy between the 2s orbital and the next-highest energy level (2p) orbital is relatively small, such that these orbitals, when filled, can together hold a combined “octet” of valence electrons.
7. The 2p Shell: Valence Electrons of Boron, Carbon, and Nitrogen
With the 2s now full, additional electrons must now be placed in an even higher energy level, the 2p orbital.
Unlike the s orbitals, which can only hold two electrons apiece, each set of p orbitals can hold six. Our interpretation of this is that each level of p orbitals (2p, 3p, 4p, etc.) is comprised of three individual dumbbell-shaped p orbitals that are aligned at right angles to each other along the x, y, and z axes.
Here’s what the electronic configuration looks like for boron. (Note: we could also choose to label the three 2p orbitals as 2px, 2py, and 2pz, but for our purposes all of these orbitals are of equivalent energies and it serves no purpose to do so here).
Note how the ionization energy of boron is slightly lower (99 kJ/mol lower) than that of beryllium, from which we can interpret that the 2p orbital is slightly farther away from the nucleus than the 2s orbital. [Note 3].
The ionization energy progresses sharply upwards from boron to carbon…. (+ 286 kJ/mol)
… and then from carbon to nitrogen (+316 kJ/mol):
8. A Sudden Dip At Oxygen
Then, at oxygen, there’s a sudden dip in the ionization energy (–89 kJ/mol):
Why?
Ever got on a bus to find out there are no remaining empty seats, and you have to (horrors!) sit next to a total stranger?
That’s essentially what’s happening here: with each of the 2p orbitals (px, py, pz) singly occupied, any additional electrons will have to pair up. That dip in ionization energy reflects greater electron-electron repulsion in a doubly occupied orbital, making the electron (slightly) easier to pull off.
9. The Electronic Configuration Of Fluorine
From oxygen to fluorine the ionization energy climbs again (+368 kJ/mol from oxygen):
10. A Maximum At Neon
And then, at neon we finally reach another local maximum of ionization energy (+399 kJ/mol from fluorine):
Here we have reached the maximum capacity of the 2s and 2p orbitals (acting together as an “octet”), where each electron in the octet will “feel” the maximum effective charge from the nucleus. In neon, each of the eight electrons in the valence “octet” itself feels a net force of +8 from the nucleus (ten protons in the nucleus minus two electrons in the intervening 1s shell) and a certain amount of electron-electron repulsion in the filled 2s and 2p orbitals.
Neon is a local maximum where the Coulombic attractive term is maximized, and so is ionization energy. This is what gives rise to the familar “octet rule”, where atoms are said to “seek out full octets” and so on.
11. The 3s orbital: Sodium
Let’s just go one atom further to illustrate the dramatic difference in behaviour between sodium and neon.
There’s a big gap between the energies of the orbitals in the n=2 shell (2s and 2p) and the orbitals in the n=3 shell (3s and 3p).
The 3s orbital is farther away from the nucleus and the attractive force from the nucleus is shielded by the 10 electrons in lower-energy orbitals. We say that the “effective nuclear charge” felt by an electron in the sodium 3s orbital is just 1. (i.e. 11 – 10 = 1).
The ionization energy of sodium is a meagre 496 kJ/mol, which is 1584 kJ/mol less than neon. Sodium gives up its valence electron readily, reacting even with water (violently!); in contrast, no other element has ever been observed to combine with neon.
We’re going to stop at this point, but you can imagine where it goes from here. [Note 4]
12. Endnote: A Puzzle. What About A Simple Molecule Like CH4?
So here’s a question. If the atomic configuration of carbon is [He]2s22p2, and the atomic configuration of hydrogen is 1s1, what might we predict the structure of the simplest hydrocarbon (CH4) to look like?
- Wouldn’t we expect to see C-H bonds along the px, py, and pz axes (bond angles of 90°) and then a fourth C-H bond in the 2s orbital as far away from the other electrons as possible (135° maybe) ?
- Wouldn’t we predict different bond lengths for the C-H bonds attached to p orbitals (farther away from nucleus) than for the C-H bond attached to the s-orbital?
- Wouldn’t we expect a (small) dipole moment for CH4 ?
Instead, here’s what’s been observed about methane:
- All the C-H bonds have identical bond lengths (1.09 Angstrom).
- All C–H bond angles are identical. The hydrogens are arranged around carbon in a perfect tetrahedron, with all H-C-H bond angles being 109.5°.
- There is no dipole moment.
What gives? How can this possibly be true, given what we now know about the s and p orbitals? How can we explain this situation where the distinctions between the 2s and 2p orbitals have been completely wiped out?
So what’s going on? We’ll talk about that in the next post.
Next Post: How Do We Know Methane Is Tetrahedral?
Thanks again to Matt for helping with this post. Hire Matt as your tutor!
Notes
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Note 1: Nor did he (or anyone else in 1913) imagine the sublimely funky shapes of the p, d and f orbitals. The wonders of nature can surpass the most fanciful human imagination.
Note 2: This also gives rise to strange phenomena like quantum tunnelling, where electrons have a non-zero chance of appearing on the other side of a barrier. It’s as if Venus were to suddenly materialize on the other side of the sun.
Note 3: although the electrons in the 2s and 2p orbitals mix and hybridize (as we’ll see) the electrons in the 2s orbital are closer to the nucleus, which can affect certain chemical properties. For example the unusually strong acidity of alkyne C-H bonds (pKa = 25) relative to alkanes (pKa = 50) can be rationalized by noting that the sp-hybridized orbital are closer to the nucleus (50% s-character) and thus more stable, relative to the pair of electrons in the sp3-hybridized orbital of an alkyl anion (25% s-character) which are farther away.
Note 4: “He fixes the cable?”
00 General Chemistry Review
01 Bonding, Structure, and Resonance
- How Do We Know Methane (CH4) Is Tetrahedral?
- Hybrid Orbitals and Hybridization
- How To Determine Hybridization: A Shortcut
- Orbital Hybridization And Bond Strengths
- Sigma bonds come in six varieties: Pi bonds come in one
- A Key Skill: How to Calculate Formal Charge
- The Four Intermolecular Forces and How They Affect Boiling Points
- 3 Trends That Affect Boiling Points
- How To Use Electronegativity To Determine Electron Density (and why NOT to trust formal charge)
- Introduction to Resonance
- How To Use Curved Arrows To Interchange Resonance Forms
- Evaluating Resonance Forms (1) - The Rule of Least Charges
- How To Find The Best Resonance Structure By Applying Electronegativity
- Evaluating Resonance Structures With Negative Charges
- Evaluating Resonance Structures With Positive Charge
- Exploring Resonance: Pi-Donation
- Exploring Resonance: Pi-acceptors
- In Summary: Evaluating Resonance Structures
- Drawing Resonance Structures: 3 Common Mistakes To Avoid
- How to apply electronegativity and resonance to understand reactivity
- Bond Hybridization Practice
- Structure and Bonding Practice Quizzes
- Resonance Structures Practice
02 Acid Base Reactions
- Introduction to Acid-Base Reactions
- Acid Base Reactions In Organic Chemistry
- The Stronger The Acid, The Weaker The Conjugate Base
- Walkthrough of Acid-Base Reactions (3) - Acidity Trends
- Five Key Factors That Influence Acidity
- Acid-Base Reactions: Introducing Ka and pKa
- How to Use a pKa Table
- The pKa Table Is Your Friend
- A Handy Rule of Thumb for Acid-Base Reactions
- Acid Base Reactions Are Fast
- pKa Values Span 60 Orders Of Magnitude
- How Protonation and Deprotonation Affect Reactivity
- Acid Base Practice Problems
03 Alkanes and Nomenclature
- Meet the (Most Important) Functional Groups
- Condensed Formulas: Deciphering What the Brackets Mean
- Hidden Hydrogens, Hidden Lone Pairs, Hidden Counterions
- Don't Be Futyl, Learn The Butyls
- Primary, Secondary, Tertiary, Quaternary In Organic Chemistry
- Branching, and Its Affect On Melting and Boiling Points
- The Many, Many Ways of Drawing Butane
- Wedge And Dash Convention For Tetrahedral Carbon
- Common Mistakes in Organic Chemistry: Pentavalent Carbon
- Table of Functional Group Priorities for Nomenclature
- Summary Sheet - Alkane Nomenclature
- Organic Chemistry IUPAC Nomenclature Demystified With A Simple Puzzle Piece Approach
- Boiling Point Quizzes
- Organic Chemistry Nomenclature Quizzes
04 Conformations and Cycloalkanes
- Staggered vs Eclipsed Conformations of Ethane
- Conformational Isomers of Propane
- Newman Projection of Butane (and Gauche Conformation)
- Introduction to Cycloalkanes (1)
- Geometric Isomers In Small Rings: Cis And Trans Cycloalkanes
- Calculation of Ring Strain In Cycloalkanes
- Cycloalkanes - Ring Strain In Cyclopropane And Cyclobutane
- Cyclohexane Conformations
- Cyclohexane Chair Conformation: An Aerial Tour
- How To Draw The Cyclohexane Chair Conformation
- The Cyclohexane Chair Flip
- The Cyclohexane Chair Flip - Energy Diagram
- Substituted Cyclohexanes - Axial vs Equatorial
- Ranking The Bulkiness Of Substituents On Cyclohexanes: "A-Values"
- Cyclohexane Chair Conformation Stability: Which One Is Lower Energy?
- Fused Rings - Cis-Decalin and Trans-Decalin
- Naming Bicyclic Compounds - Fused, Bridged, and Spiro
- Bredt's Rule (And Summary of Cycloalkanes)
- Newman Projection Practice
- Cycloalkanes Practice Problems
05 A Primer On Organic Reactions
- The Most Important Question To Ask When Learning a New Reaction
- Learning New Reactions: How Do The Electrons Move?
- The Third Most Important Question to Ask When Learning A New Reaction
- 7 Factors that stabilize negative charge in organic chemistry
- 7 Factors That Stabilize Positive Charge in Organic Chemistry
- Nucleophiles and Electrophiles
- Curved Arrows (for reactions)
- Curved Arrows (2): Initial Tails and Final Heads
- Nucleophilicity vs. Basicity
- The Three Classes of Nucleophiles
- What Makes A Good Nucleophile?
- What makes a good leaving group?
- 3 Factors That Stabilize Carbocations
- Equilibrium and Energy Relationships
- What's a Transition State?
- Hammond's Postulate
- Learning Organic Chemistry Reactions: A Checklist (PDF)
- Introduction to Free Radical Substitution Reactions
- Introduction to Oxidative Cleavage Reactions
06 Free Radical Reactions
- Bond Dissociation Energies = Homolytic Cleavage
- Free Radical Reactions
- 3 Factors That Stabilize Free Radicals
- What Factors Destabilize Free Radicals?
- Bond Strengths And Radical Stability
- Free Radical Initiation: Why Is "Light" Or "Heat" Required?
- Initiation, Propagation, Termination
- Monochlorination Products Of Propane, Pentane, And Other Alkanes
- Selectivity In Free Radical Reactions
- Selectivity in Free Radical Reactions: Bromination vs. Chlorination
- Halogenation At Tiffany's
- Allylic Bromination
- Bonus Topic: Allylic Rearrangements
- In Summary: Free Radicals
- Synthesis (2) - Reactions of Alkanes
- Free Radicals Practice Quizzes
07 Stereochemistry and Chirality
- Types of Isomers: Constitutional Isomers, Stereoisomers, Enantiomers, and Diastereomers
- How To Draw The Enantiomer Of A Chiral Molecule
- How To Draw A Bond Rotation
- Introduction to Assigning (R) and (S): The Cahn-Ingold-Prelog Rules
- Assigning Cahn-Ingold-Prelog (CIP) Priorities (2) - The Method of Dots
- Enantiomers vs Diastereomers vs The Same? Two Methods For Solving Problems
- Assigning R/S To Newman Projections (And Converting Newman To Line Diagrams)
- How To Determine R and S Configurations On A Fischer Projection
- The Meso Trap
- Optical Rotation, Optical Activity, and Specific Rotation
- Optical Purity and Enantiomeric Excess
- What's a Racemic Mixture?
- Chiral Allenes And Chiral Axes
- Stereochemistry Practice Problems and Quizzes
08 Substitution Reactions
- Introduction to Nucleophilic Substitution Reactions
- Walkthrough of Substitution Reactions (1) - Introduction
- Two Types of Nucleophilic Substitution Reactions
- The SN2 Mechanism
- Why the SN2 Reaction Is Powerful
- The SN1 Mechanism
- The Conjugate Acid Is A Better Leaving Group
- Comparing the SN1 and SN2 Reactions
- Polar Protic? Polar Aprotic? Nonpolar? All About Solvents
- Steric Hindrance is Like a Fat Goalie
- Common Blind Spot: Intramolecular Reactions
- The Conjugate Base is Always a Stronger Nucleophile
- Substitution Practice - SN1
- Substitution Practice - SN2
09 Elimination Reactions
- Elimination Reactions (1): Introduction And The Key Pattern
- Elimination Reactions (2): The Zaitsev Rule
- Elimination Reactions Are Favored By Heat
- Two Elimination Reaction Patterns
- The E1 Reaction
- The E2 Mechanism
- E1 vs E2: Comparing the E1 and E2 Reactions
- Antiperiplanar Relationships: The E2 Reaction and Cyclohexane Rings
- Bulky Bases in Elimination Reactions
- Comparing the E1 vs SN1 Reactions
- Elimination (E1) Reactions With Rearrangements
- E1cB - Elimination (Unimolecular) Conjugate Base
- Elimination (E1) Practice Problems And Solutions
- Elimination (E2) Practice Problems and Solutions
10 Rearrangements
11 SN1/SN2/E1/E2 Decision
- Identifying Where Substitution and Elimination Reactions Happen
- Deciding SN1/SN2/E1/E2 (1) - The Substrate
- Deciding SN1/SN2/E1/E2 (2) - The Nucleophile/Base
- SN1 vs E1 and SN2 vs E2 : The Temperature
- Deciding SN1/SN2/E1/E2 - The Solvent
- Wrapup: The Key Factors For Determining SN1/SN2/E1/E2
- Alkyl Halide Reaction Map And Summary
- SN1 SN2 E1 E2 Practice Problems
12 Alkene Reactions
- E and Z Notation For Alkenes (+ Cis/Trans)
- Alkene Stability
- Alkene Addition Reactions: "Regioselectivity" and "Stereoselectivity" (Syn/Anti)
- Stereoselective and Stereospecific Reactions
- Hydrohalogenation of Alkenes and Markovnikov's Rule
- Hydration of Alkenes With Aqueous Acid
- Rearrangements in Alkene Addition Reactions
- Halogenation of Alkenes and Halohydrin Formation
- Oxymercuration Demercuration of Alkenes
- Hydroboration Oxidation of Alkenes
- m-CPBA (meta-chloroperoxybenzoic acid)
- OsO4 (Osmium Tetroxide) for Dihydroxylation of Alkenes
- Palladium on Carbon (Pd/C) for Catalytic Hydrogenation of Alkenes
- Cyclopropanation of Alkenes
- A Fourth Alkene Addition Pattern - Free Radical Addition
- Alkene Reactions: Ozonolysis
- Summary: Three Key Families Of Alkene Reaction Mechanisms
- Synthesis (4) - Alkene Reaction Map, Including Alkyl Halide Reactions
- Alkene Reactions Practice Problems
13 Alkyne Reactions
- Acetylides from Alkynes, And Substitution Reactions of Acetylides
- Partial Reduction of Alkynes With Lindlar's Catalyst
- Partial Reduction of Alkynes With Na/NH3 To Obtain Trans Alkenes
- Alkyne Hydroboration With "R2BH"
- Hydration and Oxymercuration of Alkynes
- Hydrohalogenation of Alkynes
- Alkyne Halogenation: Bromination, Chlorination, and Iodination of Alkynes
- Alkyne Reactions - The "Concerted" Pathway
- Alkenes To Alkynes Via Halogenation And Elimination Reactions
- Alkynes Are A Blank Canvas
- Synthesis (5) - Reactions of Alkynes
- Alkyne Reactions Practice Problems With Answers
14 Alcohols, Epoxides and Ethers
- Alcohols - Nomenclature and Properties
- Alcohols Can Act As Acids Or Bases (And Why It Matters)
- Alcohols - Acidity and Basicity
- The Williamson Ether Synthesis
- Ethers From Alkenes, Tertiary Alkyl Halides and Alkoxymercuration
- Alcohols To Ethers via Acid Catalysis
- Cleavage Of Ethers With Acid
- Epoxides - The Outlier Of The Ether Family
- Opening of Epoxides With Acid
- Epoxide Ring Opening With Base
- Making Alkyl Halides From Alcohols
- Tosylates And Mesylates
- PBr3 and SOCl2
- Elimination Reactions of Alcohols
- Elimination of Alcohols To Alkenes With POCl3
- Alcohol Oxidation: "Strong" and "Weak" Oxidants
- Demystifying The Mechanisms of Alcohol Oxidations
- Protecting Groups For Alcohols
- Thiols And Thioethers
- Calculating the oxidation state of a carbon
- Oxidation and Reduction in Organic Chemistry
- Oxidation Ladders
- SOCl2 Mechanism For Alcohols To Alkyl Halides: SN2 versus SNi
- Alcohol Reactions Roadmap (PDF)
- Alcohol Reaction Practice Problems
- Epoxide Reaction Quizzes
- Oxidation and Reduction Practice Quizzes
15 Organometallics
- What's An Organometallic?
- Formation of Grignard and Organolithium Reagents
- Organometallics Are Strong Bases
- Reactions of Grignard Reagents
- Protecting Groups In Grignard Reactions
- Synthesis Problems Involving Grignard Reagents
- Grignard Reactions And Synthesis (2)
- Organocuprates (Gilman Reagents): How They're Made
- Gilman Reagents (Organocuprates): What They're Used For
- The Heck, Suzuki, and Olefin Metathesis Reactions (And Why They Don't Belong In Most Introductory Organic Chemistry Courses)
- Reaction Map: Reactions of Organometallics
- Grignard Practice Problems
16 Spectroscopy
- Degrees of Unsaturation (or IHD, Index of Hydrogen Deficiency)
- Conjugation And Color (+ How Bleach Works)
- Introduction To UV-Vis Spectroscopy
- UV-Vis Spectroscopy: Absorbance of Carbonyls
- UV-Vis Spectroscopy: Practice Questions
- Bond Vibrations, Infrared Spectroscopy, and the "Ball and Spring" Model
- Infrared Spectroscopy: A Quick Primer On Interpreting Spectra
- IR Spectroscopy: 4 Practice Problems
- 1H NMR: How Many Signals?
- Homotopic, Enantiotopic, Diastereotopic
- Diastereotopic Protons in 1H NMR Spectroscopy: Examples
- C13 NMR - How Many Signals
- Liquid Gold: Pheromones In Doe Urine
- Natural Product Isolation (1) - Extraction
- Natural Product Isolation (2) - Purification Techniques, An Overview
- Structure Determination Case Study: Deer Tarsal Gland Pheromone
17 Dienes and MO Theory
- What To Expect In Organic Chemistry 2
- Are these molecules conjugated?
- Conjugation And Resonance In Organic Chemistry
- Bonding And Antibonding Pi Orbitals
- Molecular Orbitals of The Allyl Cation, Allyl Radical, and Allyl Anion
- Pi Molecular Orbitals of Butadiene
- Reactions of Dienes: 1,2 and 1,4 Addition
- Thermodynamic and Kinetic Products
- More On 1,2 and 1,4 Additions To Dienes
- s-cis and s-trans
- The Diels-Alder Reaction
- Cyclic Dienes and Dienophiles in the Diels-Alder Reaction
- Stereochemistry of the Diels-Alder Reaction
- Exo vs Endo Products In The Diels Alder: How To Tell Them Apart
- HOMO and LUMO In the Diels Alder Reaction
- Why Are Endo vs Exo Products Favored in the Diels-Alder Reaction?
- Diels-Alder Reaction: Kinetic and Thermodynamic Control
- The Retro Diels-Alder Reaction
- The Intramolecular Diels Alder Reaction
- Regiochemistry In The Diels-Alder Reaction
- The Cope and Claisen Rearrangements
- Electrocyclic Reactions
- Electrocyclic Ring Opening And Closure (2) - Six (or Eight) Pi Electrons
- Diels Alder Practice Problems
- Molecular Orbital Theory Practice
18 Aromaticity
- Introduction To Aromaticity
- Rules For Aromaticity
- Huckel's Rule: What Does 4n+2 Mean?
- Aromatic, Non-Aromatic, or Antiaromatic? Some Practice Problems
- Antiaromatic Compounds and Antiaromaticity
- The Pi Molecular Orbitals of Benzene
- The Pi Molecular Orbitals of Cyclobutadiene
- Frost Circles
- Aromaticity Practice Quizzes
19 Reactions of Aromatic Molecules
- Electrophilic Aromatic Substitution: Introduction
- Activating and Deactivating Groups In Electrophilic Aromatic Substitution
- Electrophilic Aromatic Substitution - The Mechanism
- Ortho-, Para- and Meta- Directors in Electrophilic Aromatic Substitution
- Understanding Ortho, Para, and Meta Directors
- Why are halogens ortho- para- directors?
- Disubstituted Benzenes: The Strongest Electron-Donor "Wins"
- Electrophilic Aromatic Substitutions (1) - Halogenation of Benzene
- Electrophilic Aromatic Substitutions (2) - Nitration and Sulfonation
- EAS Reactions (3) - Friedel-Crafts Acylation and Friedel-Crafts Alkylation
- Intramolecular Friedel-Crafts Reactions
- Nucleophilic Aromatic Substitution (NAS)
- Nucleophilic Aromatic Substitution (2) - The Benzyne Mechanism
- Reactions on the "Benzylic" Carbon: Bromination And Oxidation
- The Wolff-Kishner, Clemmensen, And Other Carbonyl Reductions
- More Reactions on the Aromatic Sidechain: Reduction of Nitro Groups and the Baeyer Villiger
- Aromatic Synthesis (1) - "Order Of Operations"
- Synthesis of Benzene Derivatives (2) - Polarity Reversal
- Aromatic Synthesis (3) - Sulfonyl Blocking Groups
- Birch Reduction
- Synthesis (7): Reaction Map of Benzene and Related Aromatic Compounds
- Aromatic Reactions and Synthesis Practice
- Electrophilic Aromatic Substitution Practice Problems
20 Aldehydes and Ketones
- What's The Alpha Carbon In Carbonyl Compounds?
- Nucleophilic Addition To Carbonyls
- Aldehydes and Ketones: 14 Reactions With The Same Mechanism
- Sodium Borohydride (NaBH4) Reduction of Aldehydes and Ketones
- Grignard Reagents For Addition To Aldehydes and Ketones
- Wittig Reaction
- Hydrates, Hemiacetals, and Acetals
- Imines - Properties, Formation, Reactions, and Mechanisms
- All About Enamines
- Breaking Down Carbonyl Reaction Mechanisms: Reactions of Anionic Nucleophiles (Part 2)
- Aldehydes Ketones Reaction Practice
21 Carboxylic Acid Derivatives
- Nucleophilic Acyl Substitution (With Negatively Charged Nucleophiles)
- Addition-Elimination Mechanisms With Neutral Nucleophiles (Including Acid Catalysis)
- Basic Hydrolysis of Esters - Saponification
- Transesterification
- Proton Transfer
- Fischer Esterification - Carboxylic Acid to Ester Under Acidic Conditions
- Lithium Aluminum Hydride (LiAlH4) For Reduction of Carboxylic Acid Derivatives
- LiAlH[Ot-Bu]3 For The Reduction of Acid Halides To Aldehydes
- Di-isobutyl Aluminum Hydride (DIBAL) For The Partial Reduction of Esters and Nitriles
- Amide Hydrolysis
- Thionyl Chloride (SOCl2)
- Diazomethane (CH2N2)
- Carbonyl Chemistry: Learn Six Mechanisms For the Price Of One
- Making Music With Mechanisms (PADPED)
- Carboxylic Acid Derivatives Practice Questions
22 Enols and Enolates
- Keto-Enol Tautomerism
- Enolates - Formation, Stability, and Simple Reactions
- Kinetic Versus Thermodynamic Enolates
- Aldol Addition and Condensation Reactions
- Reactions of Enols - Acid-Catalyzed Aldol, Halogenation, and Mannich Reactions
- Claisen Condensation and Dieckmann Condensation
- Decarboxylation
- The Malonic Ester and Acetoacetic Ester Synthesis
- The Michael Addition Reaction and Conjugate Addition
- The Robinson Annulation
- Haloform Reaction
- The Hell–Volhard–Zelinsky Reaction
- Enols and Enolates Practice Quizzes
23 Amines
- The Amide Functional Group: Properties, Synthesis, and Nomenclature
- Basicity of Amines And pKaH
- 5 Key Basicity Trends of Amines
- The Mesomeric Effect And Aromatic Amines
- Nucleophilicity of Amines
- Alkylation of Amines (Sucks!)
- Reductive Amination
- The Gabriel Synthesis
- Some Reactions of Azides
- The Hofmann Elimination
- The Hofmann and Curtius Rearrangements
- The Cope Elimination
- Protecting Groups for Amines - Carbamates
- The Strecker Synthesis of Amino Acids
- Introduction to Peptide Synthesis
- Reactions of Diazonium Salts: Sandmeyer and Related Reactions
- Amine Practice Questions
24 Carbohydrates
- D and L Notation For Sugars
- Pyranoses and Furanoses: Ring-Chain Tautomerism In Sugars
- What is Mutarotation?
- Reducing Sugars
- The Big Damn Post Of Carbohydrate-Related Chemistry Definitions
- The Haworth Projection
- Converting a Fischer Projection To A Haworth (And Vice Versa)
- Reactions of Sugars: Glycosylation and Protection
- The Ruff Degradation and Kiliani-Fischer Synthesis
- Isoelectric Points of Amino Acids (and How To Calculate Them)
- Carbohydrates Practice
- Amino Acid Quizzes
25 Fun and Miscellaneous
- A Gallery of Some Interesting Molecules From Nature
- Screw Organic Chemistry, I'm Just Going To Write About Cats
- On Cats, Part 1: Conformations and Configurations
- On Cats, Part 2: Cat Line Diagrams
- On Cats, Part 4: Enantiocats
- On Cats, Part 6: Stereocenters
- Organic Chemistry Is Shit
- The Organic Chemistry Behind "The Pill"
- Maybe they should call them, "Formal Wins" ?
- Why Do Organic Chemists Use Kilocalories?
- The Principle of Least Effort
- Organic Chemistry GIFS - Resonance Forms
- Reproducibility In Organic Chemistry
- What Holds The Nucleus Together?
- How Reactions Are Like Music
- Organic Chemistry and the New MCAT
26 Organic Chemistry Tips and Tricks
- Common Mistakes: Formal Charges Can Mislead
- Partial Charges Give Clues About Electron Flow
- Draw The Ugly Version First
- Organic Chemistry Study Tips: Learn the Trends
- The 8 Types of Arrows In Organic Chemistry, Explained
- Top 10 Skills To Master Before An Organic Chemistry 2 Final
- Common Mistakes with Carbonyls: Carboxylic Acids... Are Acids!
- Planning Organic Synthesis With "Reaction Maps"
- Alkene Addition Pattern #1: The "Carbocation Pathway"
- Alkene Addition Pattern #2: The "Three-Membered Ring" Pathway
- Alkene Addition Pattern #3: The "Concerted" Pathway
- Number Your Carbons!
- The 4 Major Classes of Reactions in Org 1
- How (and why) electrons flow
- Grossman's Rule
- Three Exam Tips
- A 3-Step Method For Thinking Through Synthesis Problems
- Putting It Together
- Putting Diels-Alder Products in Perspective
- The Ups and Downs of Cyclohexanes
- The Most Annoying Exceptions in Org 1 (Part 1)
- The Most Annoying Exceptions in Org 1 (Part 2)
- The Marriage May Be Bad, But the Divorce Still Costs Money
- 9 Nomenclature Conventions To Know
- Nucleophile attacks Electrophile
27 Case Studies of Successful O-Chem Students
- Success Stories: How Corina Got The The "Hard" Professor - And Got An A+ Anyway
- How Helena Aced Organic Chemistry
- From a "Drop" To B+ in Org 2 – How A Hard Working Student Turned It Around
- How Serge Aced Organic Chemistry
- Success Stories: How Zach Aced Organic Chemistry 1
- Success Stories: How Kari Went From C– to B+
- How Esther Bounced Back From a "C" To Get A's In Organic Chemistry 1 And 2
- How Tyrell Got The Highest Grade In Her Organic Chemistry Course
- This Is Why Students Use Flashcards
- Success Stories: How Stu Aced Organic Chemistry
- How John Pulled Up His Organic Chemistry Exam Grades
- Success Stories: How Nathan Aced Organic Chemistry (Without It Taking Over His Life)
- How Chris Aced Org 1 and Org 2
- Interview: How Jay Got an A+ In Organic Chemistry
- How to Do Well in Organic Chemistry: One Student's Advice
- "America's Top TA" Shares His Secrets For Teaching O-Chem
- "Organic Chemistry Is Like..." - A Few Metaphors
- How To Do Well In Organic Chemistry: Advice From A Tutor
- Guest post: "I went from being afraid of tests to actually looking forward to them".
I have a question that
” We are learning about chemistry and chemical reactions on the basis of traditional or hypothetical model of atom but if we see from the point of view of Quantum Mechanical model of an atom, Does all these reactions and all this we are learning about chemistry of different elements would be same or changes or something or not ?”
and ” Why only some Nobel Gases form compound after having a complete octet ? Why there is a need to form compound for noble gases and Why only Xenon and Krypton form compounds not He, Ar, and Ne form same like them?
Xenon and Krypton have valence electrons that are sufficiently far away from the nucleus that they are not held on to as “tightly” via electrostatic forces and can form bonds with extremely good electrophiles (like fluorine). The valence electrons of argon and neon are too tightly held for compounds of these noble gases to be formed (so far)
This material leaves me with more questions than answers, which I feel is a good thing. One idea I do have, is the potential that an S orbital although shown to be a sphere, could have its electrons spinning in elaborate waves but always to be found within the sphere as stated above. The reason I state this is the view that wave/partical duality seems like a given, and what blows this bunnies brain, is the node is a non existent position that all electrons have, but can never be found there. Its almost as if the particle is flickering in and out of existence. Apparently this has been speculated before, but was something I felt myself must be the case. It gives rise to it being a particle, behaving as a wave, till the node is approached, then it briefly disappears to come back into verification on the other side of the dumbbell. The only issue I have with these models, is the one question that I wished I had of asked or thought about early on. How can positively charged particles, aka protons, remain in the nucleus of an atom. Ive played with magnets, and simply put, the repulsion makes it seem like a false model. I am not a physicist, nor overtly educated, but something must be apposing the repulsion,Quantum gravity perhaps. If there is such a thing. Newtons laws keep asserting, but in the realm of quantum, maybe everything is far from the experienced.
Regarding protons, they are held together in the nucleus by the strong nuclear force, which operates over extremely short distances.
Hi. Well, as Neils Bohr said, “Hvis man kan sætte sig ind i kvantemekanik uden at blive svimmel, har man ikke forstået noget af det” (If you can fathom quantum mechanics without getting dizzy, you don’t get it).
As for the nucleus, what keeps the positively charged protons together is the strong nuclear force, which only operates when nuclei are extremely close to each other. (Its strength tails off with distance to the 6th power).